transcriptome and data analysis Search Results


sample preparation, nucleic acid extraction, sequencing and detection protocol for transcriptomic analysis  (MetWare Ltd)
90
MetWare Ltd sample preparation, nucleic acid extraction, sequencing and detection protocol for transcriptomic analysis
Sample Preparation, Nucleic Acid Extraction, Sequencing And Detection Protocol For Transcriptomic Analysis, supplied by MetWare Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/transcriptome+and+data+analysis/pm39579983-110-15-30?v=MetWare+Ltd
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sample preparation, nucleic acid extraction, sequencing and detection protocol for transcriptomic analysis - by Bioz Stars, 2026-08
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genomic, epigenomic, and transcriptomic data for 32 tcga cancer types  (Broad Institute Inc)
90
Broad Institute Inc genomic, epigenomic, and transcriptomic data for 32 tcga cancer types
Functional impact of RB1 mutation on mRNA expression in Bladder Cancer. ( A ) In the <t>TCGA</t> BLCA (Bladder urothelial carcinoma) cohort, 1518 genes showed significant up-regulation (dark red dots, FDR < 0.01) in RB1 mutated samples whereas 1294 genes showed significant down-regulation (dark green dots, FDR < 0.01). ( B ) Among the most significant genes, up-regulation was found for CDKN2A and E2F1 (positive rank #1 and #22) whereas down-regulation was found for RB1 and CCND1 (negative rank #1 and #29). ( C ) The 1518 up-regulated genes were significantly enriched with transcriptional targets of E2F1 (Fisher's exact test, top 10 most enriched target sets).
Genomic, Epigenomic, And Transcriptomic Data For 32 Tcga Cancer Types, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/transcriptome+and+data+analysis/pmc05753188-21-7-17?v=Broad+Institute+Inc
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genomic, epigenomic, and transcriptomic data for 32 tcga cancer types - by Bioz Stars, 2026-08
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mouse extensor digitorum longus muscle transcriptomic and epigenomic data  (GeneLAB GmbH)
90
GeneLAB GmbH mouse extensor digitorum longus muscle transcriptomic and epigenomic data
Genelab datasets analyzed in the manuscript.
Mouse Extensor Digitorum Longus Muscle Transcriptomic And Epigenomic Data, supplied by GeneLAB GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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mouse extensor digitorum longus muscle transcriptomic and epigenomic data - by Bioz Stars, 2026-08
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sample preparation, rnaseq and transcriptomics data analysis  (AstraZeneca ltd)
90
AstraZeneca ltd sample preparation, rnaseq and transcriptomics data analysis
Genelab datasets analyzed in the manuscript.
Sample Preparation, Rnaseq And Transcriptomics Data Analysis, supplied by AstraZeneca ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/transcriptome+and+data+analysis/pm38084916-125-3-11?v=AstraZeneca+ltd
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sample preparation, rnaseq and transcriptomics data analysis - by Bioz Stars, 2026-08
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genome and transcriptome data  (Genentech inc)
90
Genentech inc genome and transcriptome data
Genelab datasets analyzed in the manuscript.
Genome And Transcriptome Data, supplied by Genentech inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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genome and transcriptome data - by Bioz Stars, 2026-08
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silk gland specific transcriptome and proteome analysis  (BioMimetic Therapeutics)
90
BioMimetic Therapeutics silk gland specific transcriptome and proteome analysis
Genelab datasets analyzed in the manuscript.
Silk Gland Specific Transcriptome And Proteome Analysis, supplied by BioMimetic Therapeutics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/transcriptome+and+data+analysis/pmc06192577-287-10-24?v=BioMimetic+Therapeutics
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silk gland specific transcriptome and proteome analysis - by Bioz Stars, 2026-08
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comparative analysis of proteome and transcriptome variation in mouse  (Sinsheimer Laboratories)
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Sinsheimer Laboratories comparative analysis of proteome and transcriptome variation in mouse
Genelab datasets analyzed in the manuscript.
Comparative Analysis Of Proteome And Transcriptome Variation In Mouse, supplied by Sinsheimer Laboratories, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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exactstart tools for transcriptome discovery and analysis  (Promega)
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Promega exactstart tools for transcriptome discovery and analysis
Genelab datasets analyzed in the manuscript.
Exactstart Tools For Transcriptome Discovery And Analysis, supplied by Promega, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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exactstart tools for transcriptome discovery and analysis - by Bioz Stars, 2026-08
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pcf and serum transcriptomic data  (HTG Molecular)
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HTG Molecular pcf and serum transcriptomic data
Genelab datasets analyzed in the manuscript.
Pcf And Serum Transcriptomic Data, supplied by HTG Molecular, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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computational transcriptomic analysis and mapping to kegg metabolic pathways using  (PathView Systems Ltd)
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PathView Systems Ltd computational transcriptomic analysis and mapping to kegg metabolic pathways using
Genelab datasets analyzed in the manuscript.
Computational Transcriptomic Analysis And Mapping To Kegg Metabolic Pathways Using, supplied by PathView Systems Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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integrated metabolites and transcriptome analysis by  (PathView Systems Ltd)
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PathView Systems Ltd integrated metabolites and transcriptome analysis by
Genelab datasets analyzed in the manuscript.
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transcriptomic data of the gasdermin family and emt transcription factors in cancer cell lines  (Broad Institute Inc)
90
Broad Institute Inc transcriptomic data of the gasdermin family and emt transcription factors in cancer cell lines
Genelab datasets analyzed in the manuscript.
Transcriptomic Data Of The Gasdermin Family And Emt Transcription Factors In Cancer Cell Lines, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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transcriptomic data of the gasdermin family and emt transcription factors in cancer cell lines - by Bioz Stars, 2026-08
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Image Search Results


Functional impact of RB1 mutation on mRNA expression in Bladder Cancer. ( A ) In the TCGA BLCA (Bladder urothelial carcinoma) cohort, 1518 genes showed significant up-regulation (dark red dots, FDR < 0.01) in RB1 mutated samples whereas 1294 genes showed significant down-regulation (dark green dots, FDR < 0.01). ( B ) Among the most significant genes, up-regulation was found for CDKN2A and E2F1 (positive rank #1 and #22) whereas down-regulation was found for RB1 and CCND1 (negative rank #1 and #29). ( C ) The 1518 up-regulated genes were significantly enriched with transcriptional targets of E2F1 (Fisher's exact test, top 10 most enriched target sets).

Journal: Nucleic Acids Research

Article Title: LinkedOmics: analyzing multi-omics data within and across 32 cancer types

doi: 10.1093/nar/gkx1090

Figure Lengend Snippet: Functional impact of RB1 mutation on mRNA expression in Bladder Cancer. ( A ) In the TCGA BLCA (Bladder urothelial carcinoma) cohort, 1518 genes showed significant up-regulation (dark red dots, FDR < 0.01) in RB1 mutated samples whereas 1294 genes showed significant down-regulation (dark green dots, FDR < 0.01). ( B ) Among the most significant genes, up-regulation was found for CDKN2A and E2F1 (positive rank #1 and #22) whereas down-regulation was found for RB1 and CCND1 (negative rank #1 and #29). ( C ) The 1518 up-regulated genes were significantly enriched with transcriptional targets of E2F1 (Fisher's exact test, top 10 most enriched target sets).

Article Snippet: Genomic, epigenomic, and transcriptomic data for 32 TCGA cancer types were downloaded from the Firehose of the Broad Institute ( http://gdac.broadinstitute.org/ , January 2016 version).

Techniques: Functional Assay, Mutagenesis, Expressing

Pan-cancer analysis for survival-associated gene expression signatures. ( A ) Twelve cancer types in the TCGA project with >100 death events. ( B ) The heat map shows the top 30 poor survival-associated genes. Each cell represents the signed –log 10 ( P -value). The right panel bar plot depicts corresponding meta-analysis based FDR. A and B share the same order of cancer types, as indicated below the heat map. ( C ) Increased expression of genes in the cell cycle pathway is associated with increased death risk (FDR<0.001, gene set enrichment analysis). Leading-edge genes are highlighted in red boxes in C. ( D–G ) Patients with above- (red) and below- (green) median APCDD1L mRNA abundance had significantly different survival rates in multiple cancer types such as bladder urothelial carcinoma (BLCA, D), head and neck squamous cell carcinoma (HNSC, E), kidney renal clear cell carcinoma (KIRC, F), and brain lower grade glioma (LGG, G).

Journal: Nucleic Acids Research

Article Title: LinkedOmics: analyzing multi-omics data within and across 32 cancer types

doi: 10.1093/nar/gkx1090

Figure Lengend Snippet: Pan-cancer analysis for survival-associated gene expression signatures. ( A ) Twelve cancer types in the TCGA project with >100 death events. ( B ) The heat map shows the top 30 poor survival-associated genes. Each cell represents the signed –log 10 ( P -value). The right panel bar plot depicts corresponding meta-analysis based FDR. A and B share the same order of cancer types, as indicated below the heat map. ( C ) Increased expression of genes in the cell cycle pathway is associated with increased death risk (FDR<0.001, gene set enrichment analysis). Leading-edge genes are highlighted in red boxes in C. ( D–G ) Patients with above- (red) and below- (green) median APCDD1L mRNA abundance had significantly different survival rates in multiple cancer types such as bladder urothelial carcinoma (BLCA, D), head and neck squamous cell carcinoma (HNSC, E), kidney renal clear cell carcinoma (KIRC, F), and brain lower grade glioma (LGG, G).

Article Snippet: Genomic, epigenomic, and transcriptomic data for 32 TCGA cancer types were downloaded from the Firehose of the Broad Institute ( http://gdac.broadinstitute.org/ , January 2016 version).

Techniques: Gene Expression, Expressing

Genelab datasets analyzed in the manuscript.

Journal: Scientific Reports

Article Title: Aging and putative frailty biomarkers are altered by spaceflight

doi: 10.1038/s41598-024-57948-5

Figure Lengend Snippet: Genelab datasets analyzed in the manuscript.

Article Snippet: OSD-99 , Rodent Research-1 (RR1) NASA Validation Flight: Mouse extensor digitorum longus muscle transcriptomic and epigenomic data , Galazka J, Globus R "Rodent Research 1", GeneLab, Version 4, http://doi.org/10.26030/1h3m-3q49 , Extensor digitorum longus muscle.

Techniques: Gene Expression, Expressing, Biomarker Discovery, Irradiation